rs45796650 SNP Detail

Summary

• ID
  rs45796650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29895312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGCGTG ATGACACACA
  CCTGTAAAAC CAGCACTGGG AGGTGAGGGC AGGCAGCCAT TCTCAGTACA TAACAAGTTT
  GTGACCGGCT TGGGCTACAT GAGACCCTAG AGGACACTAG GGTAAGCCCC TATCAGAATT
  AAGTGATAAA TACATAGTAA ATGGCAGCTC TTCTGTTAGT CCCTATGTCG CCATGTTGTT
  Y
  CCTCAGCTGG GAGCTCACCT GGTTCCCTTA GCTCGTTTAC TCTTGCTCAT CCTTAAACAA
  CATCGACAAA TACCTGCCGG TCCCTAAATA CTCTCCACTC ACTAGGTTGT GTGTCCTCGA
  AGCAGGCCTG TGGGATAGGT CTGTTATTGT CCCCATTCTA TGTATAAGTA AACTGAGGTT
  AAACAACCAG TCTGCTTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148668752	ENSMUSSNP4434003	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45796650					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29895312 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1846 bp distal
Cpgi18783	CpG island 18783	571 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	750 bp upstream
Rr400232	regulatory region 400232	1982 bp downstream
Rr400233	regulatory region 400233	551 bp downstream
Tssr65662	transcription start site region 65662	1930 bp downstream
Tssr71703	transcription start site region 71703	1854 bp upstream
Tssr71704	transcription start site region 71704	1747 bp upstream
Tssr71705	transcription start site region 71705	1725 bp upstream
Tssr71706	transcription start site region 71706	856 bp upstream
Tssr71707	transcription start site region 71707	844 bp upstream
Tssr71708	transcription start site region 71708	797 bp upstream
Tssr71709	transcription start site region 71709	662 bp upstream
Tssr71710	transcription start site region 71710	318 bp upstream