rs45796696 SNP Detail

Summary

• ID
  rs45796696
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164117732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGGGTCA AGAGGAGATT GGGGTTAGTG GCATCTTCAG
  GGACTGACAG AGTCCCAGAT CCTCGTGTTG AATGCTCAGT TTCTATCCAG AATTTTTTTT
  W
  AAATGTATTA AAGTCTTGTA TTATTATTCA CCATAGTGAT ATATAAGAAG GTCACCTCCT
  TACGTTTTGG AACTTAAAGT ACAGGAATCG CACCCAGCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148221280	ENSMUSSNP4699440	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45796696					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164117732 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	1300 bp proximal
Svs4	seminal vesicle secretory protein 4	144 bp downstream
Tssr21549	transcription start site region 21549	140 bp upstream
Tssr21550	transcription start site region 21550	246 bp upstream
Tssr21551	transcription start site region 21551	1290 bp upstream
Tssr21552	transcription start site region 21552	1334 bp upstream
Tssr27409	transcription start site region 27409	166 bp downstream
Tssr27410	transcription start site region 27410	189 bp downstream
Tssr27411	transcription start site region 27411	226 bp downstream
Tssr27412	transcription start site region 27412	264 bp downstream
Tssr27413	transcription start site region 27413	271 bp downstream
Tssr27414	transcription start site region 27414	289 bp downstream
Tssr27415	transcription start site region 27415	305 bp downstream
Tssr27416	transcription start site region 27416	1265 bp downstream
Tssr27417	transcription start site region 27417	1274 bp downstream
Tssr27418	transcription start site region 27418	1345 bp downstream
Tssr27419	transcription start site region 27419	1355 bp downstream
Tssr27420	transcription start site region 27420	1375 bp downstream
Tssr27421	transcription start site region 27421	1399 bp downstream
Tssr27422	transcription start site region 27422	1417 bp downstream
Tssr27423	transcription start site region 27423	1455 bp downstream
Tssr27424	transcription start site region 27424	1485 bp downstream
Tssr27425	transcription start site region 27425	1506 bp downstream
Tssr27426	transcription start site region 27426	1764 bp downstream