rs45798097 SNP Detail

Summary

• ID
  rs45798097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68257437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTGTGT TGCTTTGTTT
  TGTTTTGTTG TGATACAGGA TCTGTTATTG ACTTTGGACC ATTGTGATTA GGCTAGTCTA
  GCTAACCAAT TAATCCCTGG GTCTCCAATG TTGGGAATAC TATTACATAT AACCAGGCCT
  GGCTTTTTCA TGTGGATCAG AGGACTGAGT CCACTCTGGT TTTTCACTGT TGTGTAGCAA
  K
  CACTTTAGTA ACAGGGTCTT TTCTCTGGAC TGATTTAAAA TATGTACTCA AATTTCCCAT
  TGAACCTCAT AAACCCTCCG ACATATATGA CAATTTTTAT GCCCATTTAA AGGAAAAGAG
  GCTGATTTTG TTATGTGTCT ATGTGTCTAA TCTCTTAAAC ATAAAGATTG ATTACATCTA
  ATATGAATTG ACAGTGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146487414	ENSMUSSNP1499570	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45798097					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68257437 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	1870 bp upstream