rs45798199 SNP Detail

Summary

• ID
  rs45798199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGC GGTAAGGTCT TCTGCTTTCT
  R
  ACTGACTGCC TTGGAGCCAG CAGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61442855	NES16830263	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	A	G	A	G	G
ss136830313	ENSMUSSNP5609600	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45798199					SNP	G	G	A	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442855	NES16830263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140877 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	396 bp upstream
Tssr86589	transcription start site region 86589	113 bp downstream
Tssr86590	transcription start site region 86590	98 bp downstream
Tssr86591	transcription start site region 86591	39 bp downstream
Tssr86592	transcription start site region 86592	22 bp downstream
Tssr86593	transcription start site region 86593	within coordinates
Tssr86594	transcription start site region 86594	184 bp upstream
Tssr86595	transcription start site region 86595	422 bp upstream
Tssr86596	transcription start site region 86596	446 bp upstream