rs45798482 SNP Detail

Summary

• ID
  rs45798482
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40585046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGGAG AGGTGAGCAA
  AGGTTTAGAT ACATTGTGAT AAAACCTCTC TGCAGGAGAA AAGACTTACG TGGGATGACT
  TGGCTACAAC GCAGGTCAAG CCCCATCTAC TTGGGATTAA AATTAACCTA TGATCAATTA
  TTAGTCTGTA TCTCTGACAT CAGTGATATG CCACATTTGA AAACACCTTC CTACTTCTCA
  S
  AATCATTCTG TCTGATGCTG ACTCCGGTTC GGGACAGAAC TTGAAGTCAC TTGTGGGTCA
  TCCCCCCCCC CCCCCCCCCC CGTACATTGA GCTAAGCTTC CGTTTTTTCT TCCTCTTTCC
  CTTCTCTGTC TCCTGACCAC AGGGTGCAAG GGTACATGCT GCTTTGGAAC CAAGGGACAA
  CTGAGGTCAA GTATATTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60393099	NES15896475	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45798482					SNP	C	C	C	C	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393099	NES15896475	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40585046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13107	CpG island 13107	354 bp proximal
Intu	inturned planar cell polarity protein	513 bp upstream
Rr67318	regulatory region 67318	1046 bp distal
Rr77556	regulatory region 77556	154 bp proximal
Tssr28946	transcription start site region 28946	110 bp upstream
Tssr28947	transcription start site region 28947	246 bp upstream
Tssr28948	transcription start site region 28948	494 bp upstream
Tssr28949	transcription start site region 28949	568 bp upstream
Tssr28950	transcription start site region 28950	651 bp upstream
Tssr28951	transcription start site region 28951	681 bp upstream
Tssr28952	transcription start site region 28952	711 bp upstream
Tssr28953	transcription start site region 28953	743 bp upstream
Tssr28954	transcription start site region 28954	785 bp upstream