rs45798646 SNP Detail

Summary

• ID
  rs45798646
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45543387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC AATTGCGGTG AGGCGACAGC
  C
  CCGGCGCACA CCCGAGAAGA AGCGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148962676	ENSMUSSNP2118818	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45798646					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45543387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	within coordinates
Gm56579	predicted gene, 56579	1900 bp upstream
Mylip	myosin regulatory light chain interacting protein	within coordinates
Rr403746	regulatory region 403746	172 bp downstream
Rr478672	regulatory region 478672	1219 bp distal
Rr478673	regulatory region 478673	159 bp distal
Rr478674	regulatory region 478674	378 bp distal
Rr478675	regulatory region 478675	526 bp proximal
Rr478676	regulatory region 478676	1410 bp proximal
Rr478677	regulatory region 478677	1911 bp proximal
Tssr119571	transcription start site region 119571	161 bp downstream
Tssr119572	transcription start site region 119572	1853 bp upstream
Tssr119573	transcription start site region 119573	1869 bp upstream