rs45799596 SNP Detail

Summary

• ID
  rs45799596
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:141064567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAGATG TAGTAAAAAT
  TTAGCCAATT TCAAGGTCTT TCAAAAGATG AGTACCTTAA TTAAGACTGC TACTGCCATG
  ATAAAGCACC ATGACTAAAG AGACTGGGGA GACAATTGTC TCTTTGGCTT CTGCTGCATC
  ATCAGTGTTC ATAATTGAAG AAAATCAGGA AAGAATCTCA AACAGGGCAT CAACCTGGAA
  K
  CAGGAGTTAA TGCAGTGATC ACAGAGGGGT TCTGTTTACC AGCTCACTCT CATAGCTTGT
  CCTACATTTT ATAATTTTTA TTTTATATAA CTCAAGTCTG GTGTAGCACT GCCCACAATG
  GGCTGGGCCT CCATCAATCA CATATTAAGA AAAGTGCCTA CAAATTTGCC TATACCACAC
  TCATATGGAG GTACCTTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss145607210	ENSMUSSNP1442903	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs45799596					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:141064567 () rs orientation: forward

Symbol	Name	Function Class
Rr419889	regulatory region 419889	329 bp proximal