rs45799959 SNP Detail

Summary

• ID
  rs45799959
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185319460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACCATA AAAGCTTCAA
  GATTTATTAT TCTTCTTGGC ATAAGTACAT CAATAAATAA ACTTAAAATC ACAGAATGTC
  TTTGATTAGG TTTTTTTTTT GCATATCAAA GTGACAATAG ATAGCCTCAT AACTCAGCCT
  GAATCTTATG CAATCGATGG TTTTCCCTGA ATCTCACTTT CTTTACTTAG AGATTTTAGC
  K
  AACACACATA TAATGAATGC TCAATAGTGG GCATTTGAAG GTCAGTCCGA GTGAGGGTGG
  TTGATTAAAG TTTTTGTTGA GCATCCATCT CTCTAAGTTA TATTGGACAG CAGATAGAAA
  GATGCCCTGT ACTGTTGTTT ATGCTTGCTT AGTACTTGAT GCATTCTGGA GCCTCCCCCG
  GAGCACACGA AAGCCTGGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146436994	ENSMUSSNP3441393	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320177561	CHEV_1_187411142	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45799959					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185319460 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	1874 bp distal
Rr425415	regulatory region 425415	383 bp proximal