rs45801361 SNP Detail

Summary

• ID
  rs45801361
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3623223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTATTTT GAGATGGAAA
  GGAAACATTT CCCAGATTTT TGCAGTCAAA ATAGTCTTTA AAGTCGGTTT GTTTGGATAA
  ATGTTCAATG TTTCAAATTT GCCTTATTTT CCCCAACTCC CCATCCTGGG AGTGAGTCTG
  ATGTTCAGGT AGGATTGTGG TGCTGGTTCA AGGCTGTGAG TTCCCTGTGA CACCATCTGA
  R
  TTTCCTCTGC CTTCTATCAA AGACCGCCAG GCTGGATGTC ATAGACCACT GAGGTGTGAC
  AGAAGGGATT TTTGAGCCAC CCTAGCCTGG GTTTTATAGT CCCAGCCACT TTTATCTTGT
  TTTAAAATTC TAGCTACTAA TTCATTCTGA GTCAAGATCT CTACCAGCCA TCATTTCCTC
  TTTTCTTCTT CCCTCCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146262520	ENSMUSSNP4139338	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45801361					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3623223 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Gm75735	predicted gene, 75735	1388 bp upstream
Rr550923	regulatory region 550923	1356 bp proximal