rs45801598 SNP Detail

Summary

• ID
  rs45801598
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164290499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACAGAGGT GAGTGGTGTC GCCAACAAGT CATGACTCAC
  CCATATGTTT GGGAGACCCG TGGGTTACTG GTACCAACTC TCTGGAGCTT TTGGAGGACC
  K
  AAGCTGCTCC TTCACACCCC AGTCAGGGCT GGACTGATTG AATTCCTCTA GAGTATCTGC
  ACCAAAGAAG GCATCTTCTC TCAGCTTTAG AAATAAAGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145979037	ENSMUSSNP1354417	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45801598					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164290499 () rs orientation: forward

Symbol	Name	Function Class
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Rr422219	regulatory region 422219	1046 bp distal
Rr422220	regulatory region 422220	892 bp distal
Rr422221	regulatory region 422221	588 bp distal