rs45801782 SNP Detail

Summary

• ID
  rs45801782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20886263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTCCACA GAGCTCCCTC
  ATCCCTCAAA AGCTTTGGTT GCTTGTGGTA GCCCCTTATG CATGTCTGCT GCCCACCAAA
  CTTGCAAGGG AGAACTGCCG GAGAGCTCAG AACTTTTATC CTCACCTCCC ATCGCCACAA
  TCTCTATGGC TCCCTAGGGC CCAGGCATAC ACTAACCTCC CAAGGCCCAT TTGAGGTCGA
  R
  ACCTGCTGTA GTTGCCTCTG GTATATCCTA CAGACCCCCT CCCCACCCCC ACACAAACAC
  TTTTTCCGGC AGACTATCTT ATCTTTGGAT TTCATTCGAC TGTCACTGTC TAGGCCTTCA
  GGAACTATCT TCTCTTTTTG TTTTGTTTTT GGGACAGGGT CTTACTGTGT AATCCGGGTT
  GACCAGAAAC TCATTTCGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61357548	NES16731722	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45801782					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61357548	NES16731722	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20886263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21408	CpG island 21408	434 bp proximal
Rr206018	regulatory region 206018	within coordinates
S1pr2	sphingosine-1-phosphate receptor 2	within coordinates
Tssr83936	transcription start site region 83936	1993 bp downstream
Tssr83937	transcription start site region 83937	945 bp upstream
Tssr88347	transcription start site region 88347	1704 bp downstream
Tssr88348	transcription start site region 88348	1754 bp downstream
Tssr88349	transcription start site region 88349	1795 bp downstream