rs45802138 SNP Detail

Summary

• ID
  rs45802138
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91176339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGTTCC AGCTGTATCT
  GCCTCTTCAA GCCCTTATCT TTTCTCACCA GAACTTTGCA CAAACTCATG CAGTACTTGC
  CCAATAACAC TGGTTCTGAA CACCTGCCAT GGGTCCAAAG AAGAGCGGGG AGAGCAAGAG
  GGGGTGCCGG GGTGAGGAGC CGTAAGAAAG TGCTGTTTAA GCTTAGGAAA ACAAGACAAG
  M
  GTTAGCTGAG CAAAGGTGTT TTCCTGAAAG AATGAGGCAG CTTGTCATAA AGAGTTCACT
  TGAGTACTAT AATGGCTATT CCTGGTTATC AACTTGACTA TATCTGGAAT GAACTACAAT
  CAAAATTGGA GGACACACCC GTGATCCAGA TGTTAAGGCT GGAAGACACA AGTTTCTGAT
  CTGGATCACA ATGAAAATCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60767818	NES16403400	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45802138					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60767818	NES16403400	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91176339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	1279 bp proximal
Rr366958	regulatory region 366958	1328 bp upstream
Tssr8065	transcription start site region 8065	1576 bp upstream
Tssr8066	transcription start site region 8066	1680 bp upstream
Tssr8067	transcription start site region 8067	1694 bp upstream
Tssr8068	transcription start site region 8068	1865 bp upstream
Tssr8069	transcription start site region 8069	1958 bp upstream
Tssr12938	transcription start site region 12938	1423 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	1073 bp upstream