rs45802767 SNP Detail

Summary

• ID
  rs45802767
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173054550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGAGCCCC AAGCTTTTCT CACTTCAGCA
  ATGCTTATAA AATGCCCCAT ATGGTTGGTT GACCTCTAAT GACATTATTG AAGATTTAAG
  ATATGACCTT TTGTTTAAAA GCTGCCTTCT ACACTGTCAT TTCTTCCAAA AGCTGAGGTG
  W
  gagagagaga gagagagaga gagagagaga ATAGCTCACA CCAGCCAAGC CCAGAGCCTG
  TACCACGTGC CACAGGGCCA CATGCCCGCT CCAAATGGAG ACGTGTGCAC CTCTGTGAAC
  TCCTTTCCCC ATAAATTAAA GTagcccagc                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148330949	ENSMUSSNP5109033	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320621750	CHEV_2_173038258	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45802767					SNP	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173054550 () rs orientation: forward

Symbol	Name	Function Class
Tssr27968	transcription start site region 27968	948 bp upstream
Tssr27969	transcription start site region 27969	1043 bp downstream
Tssr27970	transcription start site region 27970	1157 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates