rs45803112 SNP Detail

Summary

• ID
  rs45803112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:21766867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTAATT TTATTATTTT
  AATTGTCTGT GCGTGCACAT ACCCCTGCAT GTAGCTATGT ACACCTGAGT GCATGTGCTC
  ACTGAGGCCA GAGGTGTCGA ATCCTTCTAC AGCTATAGTT ACAGTTGATG GTGAGCCATC
  TGACATTGGG GCCAAGGACC AGTGAGCCAT CACCCTAGCC CACTCTGCCC CATCTTTATA
  Y
  ATGACACATT ACTTTTTCTA TCACCTGTAT AATTTAAAAC AACGAGGGGT CTAGAGAGAT
  GGCTCAGCAG TTAAGTGCAG GTAATGCTTT TGCAGAGAGT TTGAGTTCCT TTCCCAGCGA
  CCACATTAAG AGGGTCACAA GCCTCTGTAA CTCCAGCTCC AGGGGAGATA GACAGACACC
  TGCCTTCATT CCTATGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61257327	NES16877059	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	T		C	C	T	C
ss146950481	ENSMUSSNP4565025	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45803112					SNP	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61257327	NES16877059	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21766867 () rs orientation: forward

Symbol	Name	Function Class
Rr428788	regulatory region 428788	1368 bp distal
Sgk1	serum/glucocorticoid regulated kinase 1	within coordinates