rs45804985 SNP Detail

Summary

• ID
  rs45804985
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156737994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTGGGAGG CAGAGGCAGG CAGATGTCTG AGTTTGAGGC
  CAGGCTGGTC TACAGAGTGA GTTCCAGGAC AGCCAGGGCT ACACAGAGAA ACCCTGTCTC
  A
  GGAAAAAAAA AAAAAAATTA GAACTTAGAC TGGCCACAAA TCCACAGTAA CCCTGTTGCC
  TGTTTTTGTC TATTTTGTCA GACAAAATAT TTCATGAGT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145809042	ENSMUSSNP3401290	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45804985					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156737994 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr396428	regulatory region 396428			613 bp upstream
Rr421275	regulatory region 421275			337 bp distal
Rr421276	regulatory region 421276			583 bp proximal