rs45805414 SNP Detail

Summary

• ID
  rs45805414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67473306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCGAGCG CCTCTCCTCC
  AGCATCATTC AGGATGGCTT GGAGACTCGG GGAGCCCAGC GGCCAGATGG TGGCGGCGGC
  GAGAGGATCC GGAGAGGCCT GAGGGGCTGC AAGGAAAGCA AGGCGGCCGG GAGCTCTAGG
  AAAGGGGACA TGCAAGCGAG TCCTGGGTGA GGGAGAGTGG GACAGACAAA CCGAAGAGGC
  Y
  GAGGATGGAC CGAAGCACAG GAGTAGTCGG GGAAGAGGAG AAAATGGAGC CGCAGAGAAG
  AGCACCCTCC AGTTTTGCGG GTTCCTCAAG TTGATTTTGT TTCCAAATCT TCGCGTTTAC
  GGATGGTTAA AATTTGTCTA GGGTTCCATC CCACGAAGAC ATTCCAGTCC CGCTTCTCAC
  TGTCGCTACT GAACTGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss62435892	NES17250944	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs45805414					SNP	C	C	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62435892	NES17250944	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67473306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6659	CpG island 6659	1162 bp distal
Cpgi6660	CpG island 6660	within coordinates
Ebf2	early B cell factor 2	within coordinates
Rr297418	regulatory region 297418	within coordinates
Tssr126330	transcription start site region 126330	1947 bp downstream
Tssr126331	transcription start site region 126331	1240 bp downstream
Tssr126332	transcription start site region 126332	1212 bp downstream
Tssr126333	transcription start site region 126333	1121 bp downstream
Tssr126334	transcription start site region 126334	1020 bp downstream
Tssr126335	transcription start site region 126335	992 bp downstream
Tssr126336	transcription start site region 126336	1851 bp upstream