rs45805738 SNP Detail

Summary

• ID
  rs45805738
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38355383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCATAGA GTGCTATCAG
  TAACACGGAC TTTAGACCAT AGTAAGGGAA GCCTCTGCTT TGGGTTCTAC TGTCACTGTT
  TGCAAAACTC CTTAGACTCT ACAGGGCTGA GTTCTTGTAC TCCTTCCTTT ATACCATGAT
  GCTTAGAATA CTGAATCTCT ACCCATCCAT TGTCTAGTCT GCATGCTTGA GTAGGGCTCT
  K
  CACTGGGTCT GAAAAACCCT AAAGGGTGAG AGTCTAACAA AGTCTAGGAT AAATGGGTGC
  CTAGAGCTTG AATTTGTTGG TCCCTCGAGG GTTCACAGTG ATGCACAAAG CCCTTTTAGA
  GCAGGTTACA GTTTGGGGTG AGAAGGGTTA AAGGCTGAGA ATTGGGGTTA GATCTTTGTG
  CTCTGCCACA CCCACCAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133127217	ENSMUSSNP4656332	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs45805738					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38355383 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	1173 bp distal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	1294 bp downstream
Rr135132	regulatory region 135132	618 bp proximal
Rr146156	regulatory region 146156	1382 bp distal
Tssr55644	transcription start site region 55644	1710 bp downstream