rs45806303 SNP Detail

Summary

• ID
  rs45806303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14068184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCAGAC TGTGATAATT
  TTATCACCAA ACTACCTTTG AGAATTTATC CTCAGTGTCT GCTAGTGGGA ACTTTGACTA
  CTAGCTGGAA AAGGCTTTTA AACTTAAGAG TAGATTCAGT GTATCATTGG ATCACTCATT
  GGTGATGGGA AAAAAATTAC CATAGTAGAT AATTTAGAGT CTACTGCCCA AACCAGCATT
  Y
  CCTTTAGTAC AGGTATAGAT GAATTCTTTA TGCACTTTAG AAATTGCCAG CTTTTATTTG
  GACTGTTTTT CTCAGTGTTT CCATTTTCAT CTTCATAGTT AATTCATGGG AATGGACCCT
  TTCACCTTCA TGTAGTAAGC TCACAGAATC ATTTTAAAGT GTTTGCAGGT CCTTCCTTCG
  CGTTCTCTCT TAGAGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60543070	NES16555063	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45806303					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543070	NES16555063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14068184 () rs orientation: forward

Symbol	Name	Function Class
Afdn	afadin, adherens junction formation factor	within coordinates
Tssr142714	transcription start site region 142714	1829 bp downstream
Tssr142715	transcription start site region 142715	1803 bp downstream
Tssr142716	transcription start site region 142716	1762 bp downstream
Tssr142717	transcription start site region 142717	1739 bp downstream
Tssr142718	transcription start site region 142718	1726 bp downstream
Tssr142719	transcription start site region 142719	1156 bp downstream