rs45807390 SNP Detail

Summary

• ID
  rs45807390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62396771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTATGGCC AGGAAGCGGG
  CGTTGACTGC ACAGAAGTGG TTGTCATGTA CATTCTTGGT GATGGGGATC CCGTCAAAGC
  AGTGCTCCCT GTTGGCCGCT TTCCCATACA CGTTCCGAAA CTTGGAACTG CGGTACTGCG
  GTCGCCAGGA CATCTGTAAG GGACCAGAAG AGGCGGGGTT AGGCTGACTA CTACTTCATG
  R
  AGGAGCTGGA CAGGGCACTG GAGAGTCAGA GGGGAGGGGA GCAAGGGGTC CCTTGGGCCC
  ACCCATTTTC ACGGATGGAT GAGAGGTGTT AGAGCCACCA AGAGCATGGG ACCTATCATG
  TGCTTGGCTG CTTGCCTAGA AGGTCTTGGT GACACAGAGC CTGGCATGAG GGTGTTCACA
  ACATTCCTGC GTATGGTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ
ss61408641	NES16791370	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ
rs45807390					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61408641	NES16791370	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62396771 () rs orientation: forward

Symbol	Name	Function Class
Coro2b	coronin, actin binding protein, 2B	within coordinates
Cpgi21898	CpG island 21898	461 bp distal
Rr368794	regulatory region 368794	451 bp downstream