rs45808329 SNP Detail

Summary

• ID
  rs45808329
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43516448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAA TCCTACCACA GACCAGAAAA
  A
  TCCTGCATTT CTGTTTTTGC CAAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146240502	ENSMUSSNP296389	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321098298	CHEV_4_43529320	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45808329					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43516448 () rs orientation: forward

Symbol	Name	Function Class
Tpm2	tropomyosin 2, beta	within coordinates
Tssr36976	transcription start site region 36976	1962 bp upstream
Tssr41428	transcription start site region 41428	1258 bp upstream
Tssr41429	transcription start site region 41429	1127 bp upstream
Tssr41430	transcription start site region 41430	683 bp upstream
Tssr41431	transcription start site region 41431	647 bp upstream
Tssr41432	transcription start site region 41432	1990 bp downstream