rs45808470 SNP Detail

Summary

• ID
  rs45808470
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105074375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GCTGGCATGG AGCCGGGCGT GGAATGCGAG TGCCTAGTGG
  GCCACTTTTG GTAAGCAGAA CGGGCGCTGC GGGATGAACC GAACGCCGGG TTAAGGCGCC
  C
  GATGCCAGCG CTCATCAGAC CCCAGAAAAG GTGTTAACAC ACCACTCTGA TGATCTTATT
  TCGTTTATGG TATTTCTTTG TTTCTAAGTA ACTTGAATTC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147491378	ENSMUSSNP764352	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs45808470					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105074375 () rs orientation: forward

Symbol	Name	Function Class
Rr212535	regulatory region 212535	within coordinates
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr95614	transcription start site region 95614	357 bp downstream
Tssr95615	transcription start site region 95615	within coordinates