rs45809596 SNP Detail

Summary

• ID
  rs45809596
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115472640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTTGTG GTTTTCTGCT
  AGCTGGGTGT TGTCCAGTTG TCTTCGGATC AATTACCAAG AAACTGTAAA TCCAGTTTAT
  ACTAGATAGA GTTCACAGTA GCAAATGACC ACCCTTGTGA GTCCACCATG TTGACAGGGT
  GCCCCTTCCC CAGAATAGCT ACTCTGCTGT GGAAGAAGGA ATCTTGTTTA CCATGTCTGG
  M
  AAGGAAATAT TACCTGTTTG AAAAATAAGA AGAACATTAG AGTTGAGCCT GATGTCCAGC
  TGGCTCTCCT AAACTAACTG GTCACTTGGA TTTCACGGAG AACTGGAAGT AAGTATTGGT
  GCCGTCCTTC TTCCTAACTC TCAAGCATCA GTTAACGGTT CAGAGTGAAG CCAGATCCCT
  GCTGTTCAGT GCAAGGAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60829327	NES16021018	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45809596					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829327	NES16021018	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115472640 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	within coordinates
Srsf9	serine and arginine-rich splicing factor 9	1501 bp downstream
Tssr48220	transcription start site region 48220	1788 bp downstream
Tssr48221	transcription start site region 48221	1709 bp downstream
Tssr52783	transcription start site region 52783	517 bp upstream
Tssr52784	transcription start site region 52784	486 bp upstream
Tssr52785	transcription start site region 52785	412 bp upstream
Tssr52786	transcription start site region 52786	341 bp upstream
Tssr52787	transcription start site region 52787	301 bp upstream
Tssr52788	transcription start site region 52788	83 bp upstream
Tssr52789	transcription start site region 52789	50 bp upstream