rs45809691 SNP Detail

Summary

• ID
  rs45809691
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:120757667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGAGCAT CTGAAGACAG
  CTACAGTGTA CTTACATATA ATAAATGAAT AAATTTTAAA AAAAAGAAAA AAAAAGAAAC
  GACATGATGA GGGTGTCTCT TCACACCAAC ATAACACTAA TTAAGACATG TTACTTGTAC
  GTATGTTTTC AGTGCTGACC ATTTGACACT ATACAACTAA TTGGTATACT CATTCCTTAC
  M
  TCTCTTACTG CCAGATTTAC TTAGTTGCTT GTATTTCTTA GTGTAGGGTT GAAGTCTCAT
  GGCCTTTTCT TCATATAATA TTACATGTCT TTTGTCCTTG TTCAGTATAT GTTTGGGCAG
  TCCTATTGGT ATATATATAT ATATCATGAG AAAAAAAACT CTCACAGAAA ATTCCGTGAT
  TTATAATATA TTCACCCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134396231	ENSMUSSNP5626130	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325960965	CHEV_X_118961579	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45809691					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:120757667 () rs orientation: forward

Symbol	Name	Function Class
Rr395603	regulatory region 395603	510 bp downstream