rs45811464 SNP Detail

Summary

• ID
  rs45811464
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23863739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC TCCCGCCGCC GTGGAAGTCT
  S
  GAGGAGGTCA GGGACCCGGT GCAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145329924	ENSMUSSNP3519417	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325326683	CHEV_17_23781732	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45811464					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23863739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	within coordinates
Gm7773	predicted gene 7773	1621 bp downstream
Mmp25	matrix metallopeptidase 25	within coordinates
Rr339268	regulatory region 339268	within coordinates
Tssr146620	transcription start site region 146620	188 bp downstream
Tssr146621	transcription start site region 146621	214 bp downstream
Tssr146622	transcription start site region 146622	234 bp downstream
Tssr146623	transcription start site region 146623	282 bp downstream
Tssr146624	transcription start site region 146624	301 bp downstream
Tssr146625	transcription start site region 146625	467 bp downstream
Tssr146626	transcription start site region 146626	499 bp downstream