rs45812277 SNP Detail

Summary

• ID
  rs45812277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90628187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCCGCCAT GTGACGCGGT CCTCCTTGCC TGCGATCCCA
  GCGCCAGCGC CCGCGCCCAG CCGCGCCGCG CATCATGCTC CTGCCAGGAC ACCCGCGTCC
  R
  CCACCCGCGC CCCAATCGGC GCAGAATCAG GGCCTCCGCA GGCAGGTAGA GCCTCCGGGG
  CAGCTTCTGC GCCTGTTCTA CTGCACGGTC CTAGTGTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148543137	ENSMUSSNP6007530	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45812277					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90628187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8431	CpG island 8431			within coordinates
Eva1c	eva-1 homolog C			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr519213	regulatory region 519213			176 bp distal
Rr519214	regulatory region 519214			1949 bp proximal
Tssr139312	transcription start site region 139312			1197 bp downstream
Tssr139313	transcription start site region 139313			1166 bp downstream
Tssr139314	transcription start site region 139314			874 bp downstream
Tssr139315	transcription start site region 139315			421 bp downstream
Tssr139316	transcription start site region 139316			149 bp downstream
Tssr139317	transcription start site region 139317			75 bp downstream
Tssr139318	transcription start site region 139318			1472 bp upstream