rs45812383 SNP Detail

Summary

• ID
  rs45812383
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177810341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGAATGG GTGCGCAAAC
  ACTGTGTCCT AGGACTGAGC TAATCTATGA GTTGCTACAC TCTTCCAACC AGCGCAGGAT
  ACTCTCACTA AATGTGAATT CTGTTTTGAG GGTTAACTGA GACTTTCTTA CATCCCACTT
  TTACAAGGGT AACCTTCCTC CATTTATTGC CTCACTTCTT TATTTTCAAA AATTAAAAAA
  G
  AAAAAAAGCA GAAGGGCTTT GGAAAACTTA GTCATCACTT CTTCACATTA CGTTGTATTC
  ACATCTCACG CTACAAACTC CAAAAACAGC ACTGAAAACT AAAAGGCAAA TGGAGTCTCT
  GCTAACCAAG GACTAACAGC GAAGGTTCCC TGGACAAACT CTATGTACTT TTGTCTTTTA
  ATGGCACACA AGCCAGCATG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146351732	ENSMUSSNP4303713	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45812383					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177810341 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	648 bp upstream
Cpgi1085	CpG island 1085	313 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr25806	regulatory region 25806	1084 bp distal
Rr29061	regulatory region 29061	59 bp proximal
Rr396636	regulatory region 396636	269 bp upstream
Tssr10371	transcription start site region 10371	652 bp upstream
Tssr10372	transcription start site region 10372	691 bp upstream