rs45812800 SNP Detail

Summary

• ID
  rs45812800
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3677199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGGTT GCCCTGGAAC
  TCCTGCTGTC ATTCTCAGGA ACACTGTCCA CTTCTTTGAG ACACACGTGT AATCCCGAGT
  CAGGAAGATC TCAAGTTCAA GGCCAACTTG AACTACATAG GAAGCTCCAG GTCAACCAGA
  GTTACATAAA ACTATCCAGG ATCAAACGCC CACGAGACCA AGACAGGAAA TACATGCCTT
  K
  CAGGTTAAGG ACTGTGTGTG CAGTTAAGAG TTAGGAGTAA GTTCCTGTTT CTTAGATCTG
  ATGTGAACTT TAAGTTTTTA AGACATACAC TAAACCTGAG GCCCCCTTCA CACGAATGGT
  TCTTCCTATT TCTTTCCTTT CATTGTTTTT TTTTTCTAAC AATGTATCAT TTACAGGGGC
  AACTCTGTGT TATCTCTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61076604	NES16054537	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45812800					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076604	NES16054537	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3677199 () rs orientation: forward

Symbol	Name	Function Class
Pcp2	Purkinje cell protein 2 (L7)	1654 bp upstream
Rr658952	regulatory region 658952	893 bp proximal
Tssr80210	transcription start site region 80210	1987 bp upstream
Tssr80211	transcription start site region 80211	1946 bp upstream
Tssr80212	transcription start site region 80212	1911 bp upstream
Tssr80213	transcription start site region 80213	1902 bp upstream
Tssr80214	transcription start site region 80214	1651 bp upstream
Tssr80215	transcription start site region 80215	1619 bp upstream