rs45815874 SNP Detail

Summary

• ID
  rs45815874
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85342144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCCAGT CTATTCCCCC
  CCCCCCACCT TTTGGTTCCT GTCTTGTAGA GTGAAGTCAC TCTGCAAGTG GTGGGTGAAA
  GGACTAAGCG CTAAATATAG TCAGTGCACC CCCACGGTCT GCTTTTTTTT TTTTTTAAGA
  TTTTTTTATT GTTATAGGTA AGTACACTGT AGCTGTCTTC AGACACATAC CCAGAAGAGG
  K
  CGTCAGATCC CATTACAGAT GGTTGGGAGC CACTTTGTGG TTGCTAGGAT TTGAACTCAG
  GATCATCTCT CCAGCCCCAC CCACAGTCTG CTTTTAAATC TTACTGCTCA CACCTTGAAC
  CAGACCAGTG CTCGTTTACA GCACTTGGCA GCTGCTTCCT CTCCACTTTC CCTGTCCTTC
  CATCAGCTTC CGCTTGTAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146149184	ENSMUSSNP6002482	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs45815874					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85342144 () rs orientation: forward

Symbol	Name	Function Class
Rr343448	regulatory region 343448	144 bp distal
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146077	transcription start site region 146077	1081 bp downstream