rs45816342 SNP Detail

Summary

• ID
  rs45816342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA TTGATGGCAT CCTATAGATT
  Y
  GGTTTTGTTA TGTAATACCA ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145737855	ENSMUSSNP6082808	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45816342					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1258 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Tssr14250	transcription start site region 14250	1499 bp downstream
Tssr14251	transcription start site region 14251	1559 bp downstream
Tssr14252	transcription start site region 14252	1590 bp downstream
Tssr14253	transcription start site region 14253	1613 bp downstream
Tssr14254	transcription start site region 14254	1630 bp downstream