rs45816948 SNP Detail

Summary

• ID
  rs45816948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27952714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGAC TTAATTTAAT TTTCTGGTTT
  Y
  CGCGTTACCG AGTGTCTCTG CCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52210471	NES15216097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45816948					SNP	C	C	C	C	C	C	C	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52210471	NES15216097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27952714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1406	CpG island 1406	1142 bp distal
Cpgi1407	CpG island 1407	179 bp distal
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates
Rr429394	regulatory region 429394	1854 bp distal
Rr429395	regulatory region 429395	within coordinates
Rr429396	regulatory region 429396	1331 bp distal
Tssr92814	transcription start site region 92814	1845 bp downstream
Tssr92815	transcription start site region 92815	1791 bp downstream
Tssr92816	transcription start site region 92816	1781 bp downstream