rs45816996 SNP Detail

Summary

• ID
  rs45816996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12276338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCATAA TCCCAGCATT
  TAAGAGAATG AGGCAGTAGG TTTATGAGTT CCAGCCTAGC CTGGGCTACA TCGCAAGACT
  GTGTTCATAG GAAGAAAATA AGCACAGCAT TCCCATGTTA CTGTAAATAA CTACACCAGA
  GTTTTTATGT ATTTTATTAT TTTTTTTTTC TATGTGTTTC TCAAGAGGAG GTCTCACATT
  R
  TAATCTAAAC TATTCTAAAC CTGTTTCCTA GCCCAGGATA ACATCAAACA GGCAATCTTC
  CTGCTCAGCC TACTAAGTGT TGGCATAGGT ATAGGCCATA CACCTGACTC AGTTAGTAAA
  CTTTAAAATT ATGGTATAGG TTGAAGAGGT AGCTCATCCA TTAAAAGCAC TTGCTGCTCT
  TGCAGAGGAC CAGATATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61743549	NES17669050	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45816996					SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61743549	NES17669050	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12276338 () rs orientation: forward

Symbol	Name	Function Class
Gm47021	predicted gene, 47021	1182 bp upstream
Rr270765	regulatory region 270765	63 bp proximal
Rr270766	regulatory region 270766	1063 bp proximal
Rr387989	regulatory region 387989	235 bp downstream
Tssr121434	transcription start site region 121434	1248 bp upstream