rs45817414 SNP Detail

Summary

• ID
  rs45817414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34934284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACACAAC GTCTTCCGCT
  AAAATGTCTT CCGCGCTGAC AGAGGAACGG TTCTGTGAGA GGGCTCGCAA AACAAAAAGG
  GTCGTGCAAA AAAGAAGAAA AGGTAGCACT CAGGCACCGC TGGGATTCGA ACCCAGGATC
  TCCTGTTTAC TAGACAGGCG CTTTAACCAA CTAAGCCACG GCGCCGCCCG CACGGCCTGT
  R
  CGAGAAACCA GTTCCCATTT CTAGTGACCT CATGAGCTTT GCTCATGCGT ACACATTTCC
  GTGCTAGCAG CGGGGCGCAT GCGCAGTGCA GTTCCTCGCG GAAACGGACT TCCGAAACCC
  AAAGGAACAC TGGAGATTTA AATAGGCTTT GCGGAGTGGG CGCCGTGTGA TGGCCTTGGT
  TTCCGAGCCA CAATAGCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993595	NES16129788	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45817414					SNP	G	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993595	NES16129788	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34934284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	within coordinates
Gm38989	predicted gene, 38989	156 bp upstream
Gm73040	predicted gene, 73040	490 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	16 bp upstream
Rr645337	regulatory region 645337	1474 bp distal
Rr645338	regulatory region 645338	167 bp distal
Rr645339	regulatory region 645339	207 bp distal
Rr645340	regulatory region 645340	within coordinates
Rr645341	regulatory region 645341	501 bp proximal