rs45817464 SNP Detail

Summary

• ID
  rs45817464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112794297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATGCTG AGGGTCATTC
  ACACTCTCAA TTCCTATGTG GTCCTAAGCC TGTCTCCCCA ACACTGCTCA CCTGTCTAGG
  TATCTTAGCT GAAGGTCAGG TCCAGGCTCT AACATAAGTC TCTGATCCTG GAAGGTTCAG
  GATCCTAGGG AGACTCTCCA GCTGCAGGGC AAATCAGGGT GGCTTCTCTC CAGATGTGCA
  R
  GACAGAGCAT TGTTCTTGGT CTCTGCTTAC ATACTGTCCA GTAGATATGG GGTACTAGGA
  CTGTGTCTGA CTATCTTGAG TGAGCGATGT CACTGGGTTC TGGTTGCCAG GTGCAGCCTT
  GGGTGTAGTG GGGTTCCTGA CTACGCTATT TTTACATGTG GGTCCTAGGG ATCTTAGGTT
  CGAGGCTTGG TGCTAAACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss138728317	ENSMUSSNP2674162	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324171484	CHEV_12_114068888	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45817464					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112794297 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	1254 bp upstream
Cpgi5185	CpG island 5185	518 bp distal
Gm52009	predicted gene, 52009	401 bp downstream
Gm56552	predicted gene, 56552	within coordinates
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	349 bp downstream
Tssr3960	transcription start site region 3960	1198 bp upstream
Tssr115439	transcription start site region 115439	1516 bp downstream
Tssr115440	transcription start site region 115440	992 bp downstream
Tssr115441	transcription start site region 115441	341 bp upstream
Tssr117911	transcription start site region 117911	1571 bp upstream
Tssr117912	transcription start site region 117912	1251 bp upstream
Tssr117913	transcription start site region 117913	1173 bp upstream