rs45817567 SNP Detail

Summary

• ID
  rs45817567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38404747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCAGGAG CTTGTGCCTT
  TTTATCCGAC CCAAATCCCA CTCTCTCAAG GGCACACACG TACATTTTCA TATTCATAGT
  GGATCCTGAA GCTACCACAA GCCATTCTCT CAACTAGTAA ATAGTTCATA TTTTACCCTT
  ATAGAAAATT AAGAACAAGC ATTATTGTTA GTTTTGTTAT TAAATAAAAT AAATTGCATG
  Y
  TTTTTTACTG GTATTTTTTG TCTCATGAGT TGATATCCAT GAAGTGACCA TTGTTTTCCA
  CCAATATCTA GTTTATATTG TGCAGTTACC TACTGAAGAC TTGAGGGTAG TTAGAATGAG
  TGTAAGATGC TCATAGCTGA GGTGTGCACA GCTCACTATG AGTATGGGAA GTTATGTACT
  CAGCATGCAT AAGGACTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss63757414	NES17089782	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs45817567					SNP	T	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63757414	NES17089782	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38404747 () rs orientation: forward

Symbol	Name	Function Class
Tmem39a	transmembrane protein 39a	within coordinates
Tssr138403	transcription start site region 138403	973 bp upstream
Tssr138404	transcription start site region 138404	995 bp upstream