rs45818194 SNP Detail

Summary

• ID
  rs45818194
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42110842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTA GCAAAATTAG TTTTGAAATA
  C
  GAACAAAGTA ATTTGTTGGG GGTCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146410864	ENSMUSSNP3344154	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325811622	CHEV_19_42196893	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45818194					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42110842 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	872 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	316 bp downstream
Rr547821	regulatory region 547821	1620 bp distal
Rr547822	regulatory region 547822	123 bp proximal