rs45818850 SNP Detail

Summary

• ID
  rs45818850
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74592411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAAAAAG ACCTGTGCTC
  TGGTCAGTGA CTACAGCGGA CCCACCCAGC TCAGCATGGG ACAGTGGAGT GATGCTGACC
  AGGGTATCTG GAAGGCCATC AGCCCATCCA TCCCTGGGCT CCCTACCAGT CACTTGCATA
  CAGGATTGTT ACAGAGTCCT GGAGAGGAGA GACAGCCTGA CCTTGGGACC TACCCCTATG
  C
  CAAAGAAAAG GGACTGACAT TCCACAAACC ACGGTCTGCA CCTTTAGCCC GGTTGATAAT
  GTCATTTACA TTCATCACAC CCCTCTCCAT GCCCCACCTC TCCTCCATCT TGCATTAAAA
  GAGATAAAGG GTAGGAATTA TTGGGGTGTA CTTGGGATAA TCAAGATTTT TGGCGGGCGG
  GGACAAGTAA CGTGCATGCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148149543	ENSMUSSNP5434800	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45818850					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74592411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7176	CpG island 7176	134 bp proximal
Gm28976	predicted gene 28976	1627 bp downstream
Rr504331	regulatory region 504331	1851 bp distal
Rr504332	regulatory region 504332	582 bp distal
Rr504333	regulatory region 504333	152 bp proximal
Rr504334	regulatory region 504334	434 bp proximal
Rr504335	regulatory region 504335	1115 bp proximal
Them6	thioesterase superfamily member 6	672 bp upstream
Tssr131582	transcription start site region 131582	631 bp upstream
Tssr131583	transcription start site region 131583	676 bp upstream
Tssr131584	transcription start site region 131584	1000 bp upstream
Tssr131585	transcription start site region 131585	1129 bp upstream
Tssr131586	transcription start site region 131586	1135 bp upstream