rs45820914 SNP Detail

Summary

• ID
  rs45820914
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16677631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAAAGT TGTCCTCTGA
  CCTCCATACA TATGCTGTGC ACAGGCATGC CCCACCGCAC ATGCATCGTA CATATGCACA
  CACACACACA CACACAAATC ATAAATAAAA CAAAAATTTC AAAATAAAAA ATTTGGAATA
  TCTGGGTACA GTGGCTCACA CCTATGATCC CAGCATTCTG AGGCAGGAGG ATTACCAGGA
  C
  TTTGAGGCTA GCCTGGGCTA CATAGTGATA TCCTGTTTCA AAAACCAAAC CCCAAAAGGA
  TCCAGGTGTG CTAGCATACA ACGTCAATCC AGCATTCAGC AAGCAAAGGC AGAAGGCAGA
  GGGCAGAGGG CAGAGGCAGA GGCTGACAGA TCTCTATGAG TTTGTGGCTA ACCTGAGCTA
  CACAGTTCTA GGCTAAACTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148399940	ENSMUSSNP6313144	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45820914					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16677631 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	748 bp proximal
Gm71929	predicted gene, 71929	1586 bp downstream
Pnma8b	PNMA family member 8B	976 bp upstream
Rr368243	regulatory region 368243	750 bp upstream
Rr642821	regulatory region 642821	337 bp distal
Rr642822	regulatory region 642822	486 bp proximal
Rr642823	regulatory region 642823	899 bp proximal
Rr642824	regulatory region 642824	1937 bp proximal
Tssr64660	transcription start site region 64660	939 bp upstream
Tssr64661	transcription start site region 64661	1988 bp upstream
Tssr70792	transcription start site region 70792	1943 bp downstream