rs45821017 SNP Detail

Summary

• ID
  rs45821017
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34611838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAGATTG ATTGATTGAT TGAGTGTATC CTAGTAAGAA
  GGCTGAGGCA AGTTGAATGT GGGTTCCAGT TAGCCTGGAC TGCATAATGT TCAAAAATGC
  A
  AATACAAAAG TTTAATAACA CAAGTTAACT CATAATACTT TAAAAAAATC AAGAAACCAA
  AATATAAGGT TCTGGCATTG AAACACATTT AAAACTTGA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322575449	CHEV_8_35207738	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45821017					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34611838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	1607 bp proximal
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661961	regulatory region 661961	1757 bp distal
Rr661962	regulatory region 661962	303 bp proximal
Rr661963	regulatory region 661963	1153 bp proximal
Tssr76860	transcription start site region 76860	1814 bp downstream
Tssr76861	transcription start site region 76861	560 bp upstream
Tssr76862	transcription start site region 76862	1641 bp upstream
Tssr76863	transcription start site region 76863	1676 bp upstream
Tssr76864	transcription start site region 76864	1691 bp upstream
Tssr80896	transcription start site region 80896	1463 bp downstream
Tssr80897	transcription start site region 80897	1897 bp downstream