rs45821459 SNP Detail

Summary

• ID
  rs45821459
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATTCAC AGACACTCGC
  ACACCCTCGG TCTGCAGAGA AGGAGGCATC CTCTTTCAAA CTCAGCTCTC TGTTCCTCAG
  ACACATGACT CTACAGACTG CAGGCTGAGC TCTGCCCTGT GCCGTCCATC CTGGCCAGCC
  AGGACACTGT CTGTGCTTCT CCTTGTGAGG GAACAGGCCA AGTTTCTAGA AATGACTGAC
  W
  CTGTCCGGTC CGAGGCTTGA AGAAGCTCGC TCTTGGAAGA ACGGGTATAC AGAGCAGCAG
  AACCCAGGCA ACAGCAGGGA TATGCAGCGG AGACCTTAGA AGGTTCCAGG ATAGCCCACA
  TGCACACACA TGTTATAGAC ACGTGTCTAC ACACGTCCCT GTGCACACAC TGTCACGGGA
  GATCAAGACG TGCCCTCAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136420909	ENSMUSSNP1958365	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45821459					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864714 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	685 bp upstream
Cpgi21698	CpG island 21698	1017 bp proximal
Rr678012	regulatory region 678012	195 bp proximal
Rr678013	regulatory region 678013	1551 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr84819	transcription start site region 84819	1911 bp upstream
Tssr89292	transcription start site region 89292	532 bp upstream
Tssr89293	transcription start site region 89293	257 bp downstream
Tssr89294	transcription start site region 89294	1550 bp downstream
Tssr89295	transcription start site region 89295	1754 bp downstream
Tssr89296	transcription start site region 89296	1780 bp downstream
Tssr89297	transcription start site region 89297	1810 bp downstream
Tssr89298	transcription start site region 89298	1837 bp downstream
Tssr89299	transcription start site region 89299	1863 bp downstream