rs45821694 SNP Detail

Summary

• ID
  rs45821694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143831402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGCTTG CTTTAGGCAA
  GCTTGGGTAA CATGGTGAGT TCTAGGCCAG CCTGGACTAT AGAGTAAGCC CAGCCTCAAA
  CAAACAGAAA ATCTAGGAAG GTGTGTATAG GAAGTGAAAA ATAATTCACC TTACATGACA
  TCGTCGCTGT GGGTGTGTTC TGAGAGGAGG AGGGTACCCT TCTTCCAGCC ACACAAGCTG
  Y
  GTTCCATCCA TCCATCTGTG TGTGGCGCAG GATGGAGGAG TTGCAGGCTA GGGTATGTGT
  ACTGGACCTG GGGGATGGTC TGCGGAGCCC TATGTTTTGT GAAGTCCTCC AAAGTTCTGG
  GGTTAAAAGG GTGTGCCACC GCTTCCCGCT CTGTTGTTTC TTTACTGTGA CAGAGAGGAG
  GGAGTACCTG GCTCAGTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852799	NES16000980	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45821694					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852799	NES16000980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143831402 () rs orientation: forward

Symbol	Name	Function Class
Ankrd61	ankyrin repeat domain 61	within coordinates
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	within coordinates
Tssr54383	transcription start site region 54383	402 bp downstream
Tssr54384	transcription start site region 54384	441 bp downstream
Tssr54385	transcription start site region 54385	494 bp downstream