rs45822724 SNP Detail

Summary

• ID
  rs45822724
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12568472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAT CCTTTTCTCC TTCCCCACAG
  G
  AAACTCCGTT AAATGACTTT GTCTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148340650	ENSMUSSNP4980092	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322106496	CHEV_7_13419894	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45822724					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12568472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	6 bp proximal
Rr642383	regulatory region 642383	within coordinates
Rr642384	regulatory region 642384	380 bp proximal
Rr642385	regulatory region 642385	448 bp proximal
Rr642386	regulatory region 642386	949 bp proximal
Tssr64479	transcription start site region 64479	198 bp upstream
Tssr64480	transcription start site region 64480	428 bp upstream
Tssr64481	transcription start site region 64481	703 bp upstream
Tssr64482	transcription start site region 64482	1405 bp upstream
Zfp110	zinc finger protein 110	216 bp upstream