rs45823688 SNP Detail

Summary

• ID
  rs45823688
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129715837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTCCTG GAAAGATTTG
  GGAAGTGCAC CCGGGGTCTT GCCAGGAAGT GCTTGGTTGC AAACCTCATT CTAATCTTAA
  TTCACCTTTA CAGGTGTGGA TGATTTCTGC TCACTGTGTC CCCCAAGGCC CCTTCAAGGG
  GTCTCTACCA TTTCCAAGAT TCCTTTCCTG ACTGTGACAT TTGGTTCTGG CCCTGGACAT
  S
  AGGGGGGGGG GGGAGTTCTA GCCAGATTTG GAAAAGGAAG GAGGGAAGAA TTGGTAAATT
  GACTTAGGCA AGTAAGATAA TTTGGCTCTT TACCTCTCCA AGACTGAGTT TCAGAATTAT
  CAGCGAGGTT TGGCAGAATT TCTGTGCAAG TGTTATTCTT ATAGTCACAG GTTCTGAATA
  AGATGTGAAA GGCACTGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147591255	ENSMUSSNP3190861	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45823688					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129715837 () rs orientation: forward

Symbol	Name	Function Class
Gm75517	predicted gene, 75517	1920 bp upstream
Rr564988	regulatory region 564988	within coordinates
Rr564989	regulatory region 564989	185 bp distal