rs45824073 SNP Detail

Summary

• ID
  rs45824073
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152610690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGGTGG TGCCCAACTG
  TGATCTGAGC ATTTGGGAGG CTGAGGCAGG AGGGTTGCAA GTTCCTAAGT CAACCTGGGC
  TTCATGGTGA GCCCCCATCT CAAGTAAACA AAGAAGGAAG AAAGAGAAAG AAAACAAGCT
  GGCTTGATGA TTGGTATATT TCAGCCCAGA TTTGACTCTG CTTCTCCGGC AGCTGTTTAG
  M
  CATAGCTGAA CAGGTTAAAT GTGCAGGCAG GAAAACTTGT TTGTTCAGTG AATTACGAGG
  GAGTGATGTT ACAGGACAGA AGAGAAAATT GTCAAATGTG GTTCAGGGGG AAACTGCGAG
  CTGTACTGCA GTCTCTTCGA CAGCAGCACG GGCGTGGCTC TGTGGTGGAT CCTGGATTAG
  AACTTCACCG CCACCATCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147974138	ENSMUSSNP1465475	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45824073					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152610690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12465	CpG island 12465	1941 bp distal
Rr567460	regulatory region 567460	1688 bp distal
Rr567462	regulatory region 567462	529 bp distal
Rr567463	regulatory region 567463	836 bp proximal