rs45825271 SNP Detail

Summary

• ID
  rs45825271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53603696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAGCTT CAATTTGCAG
  CTCCCTGATG GCTAAGGACA GTGAACCTGC AAAACTTCAC TACTTGCATT TTTTCTTCTG
  AGTCTCTACT CAGTTGCATT GCCCACTTTT GATTGGATTG CTCCTATCCC TTCATGTTTA
  GTTTTGGGTT CCTTATACAC CATACATCTG TCAGATGTGA ACATGGCCAA GATTTTTTCC
  Y
  CCTATTTTAT AGGTGATTTC TTCAATTAAT TGACAGTTTC CTTTGTGTAC AAAAGCTTTT
  TAAGTTATGA AGTCCCACCT GTTCACTGTA AGTTTTTATT TCCGGGATGA GAAGAGCGTG
  ATTCAGAAAG TCCTTACCTA AGCCTAAATC CCTCTCTTCC AGAAGTTTCA GTTCTGATAT
  TGCGATCTGG GATCTCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149017028	ENSMUSSNP4785243	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324342258	CHEV_13_53545029	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45825271					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53603696 () rs orientation: forward

Symbol	Name	Function Class
Gm2762	predicted gene 2762	within coordinates
Rr480048	regulatory region 480048	1740 bp distal
Tssr119835	transcription start site region 119835	1403 bp downstream