rs45825787 SNP Detail

Summary

• ID
  rs45825787
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:140089889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGTGATAAGA GATGACTTAC TAGCGCATAC ATCATTCTAA
  ATAAGGAAGC CGTGTTTGTG GTACCTACAG TAGTACATGA AGCCCAGCTG GAACTGTGCA
  W
  TAGGCCATCC CTTCTCCGCA GCTTTCTGGA AGTATTTAAG TGCTTCACCA TAATTCTGCA
  AGATAATTAC ACTGTATTAC TCAAAGCTAT GTGTATAACT C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147675422	ENSMUSSNP1090458	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45825787					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140089889 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566094	regulatory region 566094			1952 bp proximal
Sel1l2	sel-1 suppressor of lin-12-like 2 (C. elegans)			Coding-NonSynonymous
				Noncoding-Transcript-Variant