rs45825908 SNP Detail

Summary

• ID
  rs45825908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4005168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAAAGA GGTTAAGAGC
  AGTGACTAAG AGAGGCCACT GAACATCTTT GTCCCCAGAG AGCTGCCTTT CCGCGACAGG
  TAAGGGTGTC TCAGCTCTGG ACAGCTCCCT TACTCTGAGC TCTGACCCCG GACCTTGGGA
  TCCTCAGCAG ACTGGCGTTC TGGTTTGTAG CGGACCTGAC CTCTTCTCAA ACTTCTGAGA
  Y
  GGGAGAGAGC TGAGCCCGGA TGATGGGTTG ACAGACTGCT CCAGAGAGCA GGTGGTTTGG
  CGACTCCATC TGGGGATGGT CCCAGAGTCC GCATGGAGGA ATGAAGTGTT GGGAGGCTTA
  GGATTGTCTT AGACTCCGAC TGGCCCCTGG GGAGATTTTG GGAGAGTTCC CCTTTAGGCT
  TCTCCTTCCG ATTGTTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61337288	NES16941783	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45825908					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337288	NES16941783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4005168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4369	CpG island 4369	204 bp distal
Pomc	pro-opiomelanocortin-alpha	within coordinates
Rr366691	regulatory region 366691	136 bp downstream
Rr462232	regulatory region 462232	198 bp proximal
Rr462233	regulatory region 462233	1286 bp proximal
Rr462234	regulatory region 462234	1370 bp proximal
Tssr112541	transcription start site region 112541	211 bp downstream