rs45826393 SNP Detail

Summary

• ID
  rs45826393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAAGCCT CAGCGTAACA
  GACACAAACA ACTGGACTGA AAGGAGAAGC GCTAAAGTTG GTTACCCAGC ATTAGCTCTC
  GAGAAACATC AACCATTTTC TTACCTATGG TTACATCTCC TCTGATTTCG CTTTCTACAC
  ACACTACTGC TCCGGGAGCA ATCTTCACAC TGTAGGAAGA AAGAGAACAC TCATCCTGAG
  Y
  AACACTGAAA GTATGGACGG TGGGTGAGAG GGCTCCATGG ATAAAGCCCT GCTGTGTTAA
  GCCCAGTGAC CCATTCAGAG CCTTGGAACC CATGGAAATA AAATTAAAAT GTAAATATGT
  TACAGAAGGT ATGCTGGGGC CAGCCAGATG GCTCAGTGGA GAAAGGGGCT GATAAAGGAA
  GGTGCTTGCT GCCAAGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60592254	NES16320182	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	T	C	T	T		T	C	T	T		C
ss149092863	ENSMUSSNP5788151	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322575034	CHEV_8_35169492	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45826393					SNP	C	C	C	C	C	T	C	T	C	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592254	NES16320182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1677 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1908 bp upstream
Rr661952	regulatory region 661952	465 bp proximal
Rr661953	regulatory region 661953	897 bp proximal
Rr661954	regulatory region 661954	1404 bp proximal
Rr661955	regulatory region 661955	1413 bp proximal
Tssr80889	transcription start site region 80889	1324 bp downstream
Tssr80890	transcription start site region 80890	1378 bp downstream