rs45827117 SNP Detail

Summary

• ID
  rs45827117
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36727838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAATCCTGA GCTCTCCACA TTCCCCCTTG CTGTCTCCCT
  CCCTGTTTGA CCTGACTCCA CAGCAGCCAG TTGACTAGAG CTCTGGCAGC AAGGACACAG
  M
  TGCAGCTACG GCCCCCCAGC CCCGCCTACT CAACCCTGCC ACCCAGTGCT CTGTGGCACG
  GCGTGATCTC TCGCGCGCGC CCCACCGCCC TGAGTGCCTG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63456909	NES17003092	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45827117					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63456909	NES17003092	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36727838 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	within coordinates
Cpgi7034	CpG island 7034	within coordinates
Gm41297	predicted gene, 41297	within coordinates
Tssr131079	transcription start site region 131079	1269 bp downstream
Tssr131080	transcription start site region 131080	1215 bp downstream
Tssr131081	transcription start site region 131081	1193 bp downstream
Tssr131082	transcription start site region 131082	898 bp downstream
Tssr131083	transcription start site region 131083	722 bp downstream
Tssr131084	transcription start site region 131084	653 bp downstream