rs45827851 SNP Detail

Summary

• ID
  rs45827851
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47885318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATACTTCAAA ACTTAGAGGA TTAGTCTTAA ATACCAATAG
  GGCTTGCCAC CTGTAACATA TCTAGTACAT CTTTTTGTTT TGATGTGAGC AATTAGAAAG
  T
  TTATAGGAAG GAAGCATCCA GCTGTTCCCC TTTGAGAAGT CAAAGTTCAT CCGAATAGAA
  GTGGCTGGCG CATTTATACT TCTGTATCGA CTATAAGAAG T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss139408758	ENSMUSSNP4070533	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45827851					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47885318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	923 bp proximal
Ktn1	kinectin 1	1233 bp upstream
Rr297095	regulatory region 297095	482 bp proximal
Tssr125321	transcription start site region 125321	538 bp upstream
Tssr125322	transcription start site region 125322	586 bp upstream
Tssr125323	transcription start site region 125323	1241 bp upstream
Tssr125324	transcription start site region 125324	1432 bp upstream
Tssr128337	transcription start site region 128337	1353 bp downstream