rs45828035 SNP Detail

Summary

• ID
  rs45828035
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137872953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTCACAA CCATCTGTAA TGGGATCTGA TGCCCTCTTC
  TGGTGTGTCT GAAGACAGCG ACAGTGTACT CACATACATA AAATAAGTAA ATAAATCTTT
  W
  AAAAAAACAA AAGTTTTAAG AAGTGTCCCT GGTTAAGACG ACACTGTTGC CTGGTAGGAC
  CAGACCCAGG CTTGGACTTC TCTCCCACAC CAGTCTGTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147634437	ENSMUSSNP5816157	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321370845	CHEV_4_137701557	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45828035					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137872953 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Tssr39828	transcription start site region 39828	1773 bp upstream
Tssr39829	transcription start site region 39829	1788 bp upstream
Tssr39830	transcription start site region 39830	1825 bp upstream